a gap-filling tools of genome in complex region.
☆26Dec 30, 2025Updated 4 months ago
Alternatives and similar repositories for TRFill
Users that are interested in TRFill are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic Elongation of a Genome Assembly Path☆25Updated this week
- Telomere compliment tools☆27Nov 17, 2025Updated 5 months ago
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- ☆27Mar 27, 2026Updated last month
- ☆45Jul 23, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- ☆18Apr 28, 2026Updated last week
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- ☆21Jan 13, 2026Updated 3 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆36Sep 22, 2023Updated 2 years ago
- ☆23Feb 26, 2026Updated 2 months ago
- ☆16Jul 25, 2021Updated 4 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- ☆26Apr 22, 2025Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆170Oct 29, 2025Updated 6 months ago
- ☆19Nov 19, 2025Updated 5 months ago
- This is the standalone version of the EviAnn pipeline☆144Apr 24, 2026Updated last week
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆235Sep 6, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago
- ☆42May 19, 2025Updated 11 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated last year
- ☆28Oct 20, 2023Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆267Jan 5, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆42Updated this week
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆84Dec 3, 2025Updated 5 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- ☆29Jul 16, 2022Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Apr 28, 2026Updated last week