panlab-bioinfo / TRFillLinks
a gap-filling tools of genome in complex region.
☆20Updated 3 months ago
Alternatives and similar repositories for TRFill
Users that are interested in TRFill are comparing it to the libraries listed below
Sorting:
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated last week
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- ☆39Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- BAsh-Based Automated Parallel Positive selection Analysis☆16Updated last month
- ☆32Updated 7 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 8 months ago
- ☆21Updated last year
- ☆41Updated 2 years ago
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆42Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆34Updated 3 weeks ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 8 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 11 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Graph-based Sequence Assembly Toolkit☆22Updated 11 months ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- HiCAT new project☆29Updated 6 months ago
- ☆25Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- ☆16Updated 4 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆30Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Genome haplotype assembly and assessment method☆12Updated last year