☆26Jun 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for tetraDecoder
Users that are interested in tetraDecoder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic Elongation of a Genome Assembly Path☆26Apr 29, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆25Jul 29, 2025Updated 11 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated last month
- A KMER-based genome-wIde Assocation testing approach on polyploids☆63Jun 18, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 3 months ago
- This is a modified version of EDTA☆15Updated this week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 8 months ago
- ☆33Apr 7, 2025Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 6 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆29Oct 20, 2023Updated 2 years ago
- A chromosome-level polyploid phasing scaffolding tool☆18Updated this week
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- ☆15Apr 16, 2026Updated 3 months ago
- ☆28May 12, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- annotation base on snakemake☆12May 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- A Tool for low Coverage HiFi Data Assembly☆43Dec 27, 2025Updated 6 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆52Jul 3, 2026Updated 2 weeks ago
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 3 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- ☆44Dec 29, 2025Updated 6 months ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 7 months ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated 3 weeks ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago