Alternatives and similar repositories for CAU-T2T-Sheep

Users that are interested in CAU-T2T-Sheep are comparing it to the libraries listed below

• lardo / khaper
  ☆27Updated 2 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• unavailable-2374 / Pan_TE
  PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
  ☆14Updated 2 weeks ago
• i10labtitech / GINGER
  ☆28Updated last year
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆14Updated last month
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆19Updated last week
• yhw320 / PanSyn
  ☆20Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• simon19891216 / CentIER
  ☆31Updated 9 months ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated 6 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 5 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 9 months ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 2 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆30Updated 4 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 7 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆32Updated 8 months ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆28Updated 2 weeks ago
• likui345 / PGA
  ☆15Updated 3 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• kavonrtep / dante_ltr
  ☆10Updated 2 weeks ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆41Updated 4 months ago