baoxingsong / GEANLinks
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
☆45Updated 2 years ago
Alternatives and similar repositories for GEAN
Users that are interested in GEAN are comparing it to the libraries listed below
Sorting:
- ☆42Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆31Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Draw a dot plot from a paf alignment☆33Updated 4 months ago
- Yet another Hi-C scaffolding tool☆21Updated 9 months ago
- ☆30Updated 7 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated 11 months ago
- ☆31Updated 11 months ago
- ☆77Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated 2 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- ☆35Updated last year
- ☆32Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- TGS scaffolding☆46Updated 3 years ago
- test repository☆29Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago