baoxingsong / GEAN
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
☆45Updated 2 years ago
Alternatives and similar repositories for GEAN:
Users that are interested in GEAN are comparing it to the libraries listed below
- A pipeline for isoseq☆23Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 11 months ago
- ☆42Updated 11 months ago
- Plant genome assembly and annotation pipeline using snakemake☆43Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- ☆32Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- A tool for performing collinearity-incorporating homology inference☆29Updated last year
- ☆43Updated 8 years ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆53Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- ☆34Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated 8 months ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- ☆29Updated 3 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- ☆28Updated 2 years ago
- ☆76Updated 4 years ago