☆10Dec 4, 2023Updated 2 years ago
Alternatives and similar repositories for fatecompass
Users that are interested in fatecompass are comparing it to the libraries listed below
Sorting:
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Repository for the scLiTr (single-cell Lineage Tracing analysis) python package☆15Jan 22, 2026Updated last month
- ☆15Feb 6, 2026Updated 3 weeks ago
- Cell cycle inference in single-cell RNA-seq☆50Apr 25, 2023Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 7 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- ☆13Nov 9, 2022Updated 3 years ago
- ☆19Mar 31, 2023Updated 2 years ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆32Mar 14, 2025Updated 11 months ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 4 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Feb 23, 2026Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated last week
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Jan 20, 2025Updated last year
- Global Waddington-OT☆23Mar 25, 2025Updated 11 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆29Aug 20, 2025Updated 6 months ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- ☆26Dec 25, 2023Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆43Dec 16, 2024Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 9 months ago
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Distributed single-cell data analysis.☆38Feb 10, 2026Updated 3 weeks ago
- ☆36Apr 16, 2025Updated 10 months ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆41Jul 10, 2024Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Sep 20, 2024Updated last year
- ☆12Dec 23, 2025Updated 2 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆16Jan 30, 2026Updated last month
- ☆11Feb 11, 2021Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago