MatthewRalston / kmerdb
Python CLI
☆12Updated last month
Alternatives and similar repositories for kmerdb:
Users that are interested in kmerdb are comparing it to the libraries listed below
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Find Unique genomic Regions☆29Updated last month
- ☆19Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- drunk on perbase pileups and lua expressions☆18Updated this week
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆39Updated 6 months ago
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- ☆28Updated 3 weeks ago
- Variant call adjudication☆16Updated 10 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago