Alternatives and similar repositories for DeepGRN

Users that are interested in DeepGRN are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 5 months ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• jzhoulab / puffin_manuscript
  ☆17Updated 11 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• xiongxslab / Translatomer
  ☆24Updated 2 weeks ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆30Updated 8 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• liu-bioinfo-lab / EPCOT
  ☆24Updated last year
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 2 weeks ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 10 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆61Updated 5 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆67Updated 2 years ago
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆29Updated 5 months ago
• theislab / tcellmatch
  ☆40Updated 5 years ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆43Updated this week
• smaslova / AI-TAC
  ☆27Updated 2 years ago
• ohlerlab / DeepRiPe
  ☆24Updated last year
• JanZrimec / DeepExpression
  ☆34Updated 2 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆43Updated 2 years ago
• FunctionLab / DeepArk
  Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning
  ☆17Updated 4 years ago
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆25Updated 9 months ago
• Illumina / PromoterAI
  ☆77Updated 3 months ago
• JiaqiLiZju / Nvwa
  ☆35Updated 3 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆13Updated 7 months ago