leeprichman / ClonoCluster
Combined clonality and transcriptome scRNAseq clustering method
☆11Updated 2 years ago
Alternatives and similar repositories for ClonoCluster:
Users that are interested in ClonoCluster are comparing it to the libraries listed below
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- ☆19Updated 11 months ago
- ☆12Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- ☆26Updated last year
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago
- Gene Expression Decomposition and Integration☆17Updated last month
- The million-scale method for single-cell analysis☆10Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 5 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 3 months ago
- ☆10Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆9Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 5 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆9Updated last year
- ☆12Updated 5 years ago
- Code for EpiMap data browser☆14Updated 9 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 4 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆16Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago