leeprichman / ClonoCluster
Combined clonality and transcriptome scRNAseq clustering method
☆11Updated 2 years ago
Alternatives and similar repositories for ClonoCluster:
Users that are interested in ClonoCluster are comparing it to the libraries listed below
- ☆12Updated 3 years ago
- Gene Expression Decomposition and Integration☆16Updated 4 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- ☆19Updated 8 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated 9 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 9 months ago
- A gene expression signature scoring Python package.☆10Updated last month
- scGRO-seq analyses codes☆10Updated last year
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 2 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆11Updated 9 months ago
- ☆26Updated last year
- Tools for assessing clustering robustness☆22Updated this week
- Code for EpiMap data browser☆14Updated 7 months ago
- Vaeda method for computational doublet annotation☆14Updated 6 months ago
- ☆10Updated 2 years ago
- ☆11Updated last year
- ☆11Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆15Updated 7 months ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆11Updated 11 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Perturb-seq analysis package☆14Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago