leeprichman / ClonoCluster

Related projects: ⓘ

• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆10Updated 3 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆13Updated 5 months ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆14Updated 3 weeks ago
• soumelis-lab / ICELLNET
  ☆18Updated 4 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆16Updated 2 years ago
• debsin / dropClust
  Version 2.1.0 released
  ☆23Updated 5 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆19Updated 5 months ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• Mangul-Lab-USC / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆11Updated 5 months ago
• MarioniLab / MouseGastrulationData
  Clone of the Bioconductor repository for the MouseGastrulationData package.
  ☆11Updated 7 months ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 3 months ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• songlab-cal / scquint
  ☆15Updated 3 months ago
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• pachterlab / GSP_2019
  Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."
  ☆11Updated 4 years ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated last year
• ELELAB / MoonlightR
  ☆17Updated 4 months ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆13Updated 2 months ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 2 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆21Updated this week
• cole-trapnell-lab / pseudospace
  ☆11Updated 5 years ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆10Updated 11 months ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆17Updated last year
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 3 weeks ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 3 years ago