Alternatives and similar repositories for ClonoCluster

Users that are interested in ClonoCluster are comparing it to the libraries listed below

• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆9Updated 3 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• pachterlab / GSP_2019
  Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."
  ☆11Updated 5 years ago
• Mangul-Lab-USC / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆12Updated last year
• KlugerLab / ALRA-paper
  ☆9Updated 3 years ago
• yasinkaymaz / HieRFIT
  Hierarchical Random Forest for Information Transfer
  ☆12Updated 4 years ago
• dibbelab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆15Updated 2 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• vals / Blog
  ☆37Updated last week
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆18Updated 4 months ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated this week
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated 2 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆13Updated 2 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 6 years ago