sinanugur / cellsnake
Cellsnake tool main repo
☆34Updated last year
Alternatives and similar repositories for cellsnake:
Users that are interested in cellsnake are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- ☆33Updated 5 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated last month
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated this week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 11 months ago
- ☆21Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated last month
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- ☆28Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- RNA editing tests☆17Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- ☆17Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆38Updated 4 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- workshop website on readthedocs☆19Updated last month
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆47Updated 2 months ago
- ☆31Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago