Cellsnake tool main repo
☆36Feb 22, 2024Updated 2 years ago
Alternatives and similar repositories for cellsnake
Users that are interested in cellsnake are comparing it to the libraries listed below
Sorting:
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Dec 3, 2025Updated 3 months ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- ☆13Aug 9, 2022Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Oct 4, 2021Updated 4 years ago
- Vaeda method for computational doublet annotation☆18Feb 1, 2026Updated last month
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- ☆10Dec 4, 2023Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- ☆41Jun 24, 2025Updated 8 months ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆11Oct 31, 2024Updated last year
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 7 months ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 2 months ago
- ☆11May 10, 2025Updated 9 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Jan 14, 2026Updated last month
- A python package for showing JBrowse views☆26Jan 3, 2024Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆13Feb 12, 2026Updated 2 weeks ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆18Feb 5, 2025Updated last year
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆13Feb 23, 2018Updated 8 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- ☆36Nov 26, 2025Updated 3 months ago
- Nonnegative spatial factorization for multivariate count data☆65Jun 28, 2023Updated 2 years ago
- ☆23Nov 28, 2025Updated 3 months ago
- R package IReNA☆29Nov 13, 2024Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- development of network co-localization tool☆14Feb 23, 2026Updated last week
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year