sinanugur / cellsnakeLinks
Cellsnake tool main repo
☆33Updated last year
Alternatives and similar repositories for cellsnake
Users that are interested in cellsnake are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- ☆49Updated 11 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 3 weeks ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 2 months ago
- ☆38Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆27Updated last month
- ☆47Updated 6 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 9 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆21Updated 5 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 3 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- A single cell sequencing read simulator.☆33Updated 9 months ago
- ☆40Updated 7 years ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- ☆32Updated 5 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago