sinanugur / cellsnake
Cellsnake tool main repo
☆34Updated 10 months ago
Alternatives and similar repositories for cellsnake:
Users that are interested in cellsnake are comparing it to the libraries listed below
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆45Updated 5 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆33Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- ☆29Updated 4 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆44Updated 10 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated this week
- ☆33Updated 5 years ago
- ☆46Updated last week
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- ☆31Updated 8 months ago
- ☆38Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- RNA editing tests☆16Updated 4 years ago
- A snakemake pipeline for 10X genomics cellranger☆19Updated last month
- scRNA-seq cell type identification☆44Updated 5 years ago
- scWGCNA☆56Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆29Updated 2 months ago
- ☆56Updated 4 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- scSNV Mapping tool for 10X Single Cell Data☆22Updated 9 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆56Updated last month
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆13Updated last year