sinanugur / cellsnakeLinks
Cellsnake tool main repo
☆36Updated last year
Alternatives and similar repositories for cellsnake
Users that are interested in cellsnake are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆38Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- ☆34Updated 6 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Toolkit for single-cell copy number analysis☆29Updated last month
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- RAGE-seq scripts☆18Updated 4 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Updated 2 weeks ago
- ☆41Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆53Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆48Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆20Updated 2 months ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago