sinanugur / cellsnakeLinks
Cellsnake tool main repo
☆36Updated last year
Alternatives and similar repositories for cellsnake
Users that are interested in cellsnake are comparing it to the libraries listed below
Sorting:
- ☆54Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆34Updated 6 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Toolkit for single-cell copy number analysis☆29Updated last month
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- ☆48Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆40Updated 5 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last week
- ☆38Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 2 weeks ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week