sinanugur / cellsnakeLinks
Cellsnake tool main repo
☆35Updated last year
Alternatives and similar repositories for cellsnake
Users that are interested in cellsnake are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆51Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆34Updated 6 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- binned motif enrichment analysis and visualisation☆42Updated last month
- An R package to time somatic mutations☆64Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Toolkit for single-cell copy number analysis☆24Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- RNA editing tests☆17Updated 5 years ago
- ☆47Updated 9 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 weeks ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 weeks ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago