Alternatives and similar repositories for gWOT

Users that are interested in gWOT are comparing it to the libraries listed below

• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated 3 years ago
• cliffzhou92 / MuTrans-release
  ☆17Updated 4 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆52Updated last year
• AllonKleinLab / cospar
  ☆26Updated 2 years ago
• yutongo / TIGON
  ☆52Updated 10 months ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆20Updated last year
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆22Updated 2 years ago
• YosefLab / velovi
  ☆41Updated last month
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• zcang / SpaOTsc
  ☆47Updated 6 months ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆36Updated 3 months ago
• AllonKleinLab / paper-data
  ☆23Updated 4 months ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆18Updated 4 years ago
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆27Updated last year
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆13Updated last year
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆23Updated 11 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆73Updated 8 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆62Updated 2 years ago
• YosefLab / SymSim
  ☆27Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆116Updated last year
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 3 years ago
• jaydu1 / VITAE
  Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
  ☆32Updated 10 months ago
• bowang-lab / DeepVelo
  ☆48Updated 2 years ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆73Updated last year
• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 8 months ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆78Updated last year