edroaldo / fuscaLinks
Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it contains two modules: 1) CellRouter, for reconstruction of complex single-cell trajectories, and 2) CellComm, to infer intercellular communication networks from scRNA-seq data.
☆21Updated 2 years ago
Alternatives and similar repositories for fusca
Users that are interested in fusca are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆60Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆37Updated 3 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- R and MATLAB scripts for MAGICAL☆11Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆25Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- Code used to process the data of the HBCA project☆32Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- ☆41Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆24Updated 7 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆50Updated 5 years ago