edroaldo / fuscaLinks
Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it contains two modules: 1) CellRouter, for reconstruction of complex single-cell trajectories, and 2) CellComm, to infer intercellular communication networks from scRNA-seq data.
☆19Updated 2 years ago
Alternatives and similar repositories for fusca
Users that are interested in fusca are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- ☆32Updated 4 months ago
- ☆41Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆22Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- scWGCNA☆60Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago