qiaochen / VeloAE
Low-dimensional Projection of Single Cell Velocity
☆27Updated 2 years ago
Alternatives and similar repositories for VeloAE:
Users that are interested in VeloAE are comparing it to the libraries listed below
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆25Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 10 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- R implementation of GeneTrajectory☆58Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 4 months ago
- ☆20Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 7 months ago
- scWGCNA☆60Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- ☆55Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Reproducing result from the paper☆33Updated 3 years ago
- ☆43Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 8 months ago
- ☆21Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆25Updated 3 weeks ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago