LUMC / dgeAnalysisLinks
R package with Shiny application for DGE analysis
☆12Updated last year
Alternatives and similar repositories for dgeAnalysis
Users that are interested in dgeAnalysis are comparing it to the libraries listed below
Sorting:
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆16Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆83Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Motif manipulation functions for R.☆30Updated 4 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 10 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆57Updated 3 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 8 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- iread☆25Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- ☆10Updated 3 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated this week
- R interface to genome annotation files and the UCSC genome browser☆35Updated last month
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago