dpeerlab / scKINETICS
Code for scKINETICS (ISMB 2023)
☆21Updated last year
Alternatives and similar repositories for scKINETICS:
Users that are interested in scKINETICS are comparing it to the libraries listed below
- A python package for chromVAR☆27Updated last year
- ☆26Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Benchmark of GRNs using the GRETA pipeline☆23Updated last week
- ☆35Updated 3 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- Single cell omics biology annotations☆50Updated 3 weeks ago
- RNA velocity validation☆22Updated 3 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆14Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- ☆36Updated 6 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆29Updated 3 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 4 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆27Updated 11 months ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆21Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year