MACA: Marker-based automatic cell-type annotation for single cell expression data
☆25Jul 12, 2023Updated 2 years ago
Alternatives and similar repositories for MACA
Users that are interested in MACA are comparing it to the libraries listed below
Sorting:
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 2 years ago
- R package for generalized binary covariance decomposition.☆14Jul 13, 2025Updated 7 months ago
- ☆17Apr 9, 2021Updated 4 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- ☆49Feb 14, 2024Updated 2 years ago
- ☆18May 12, 2023Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 9 months ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆10Dec 4, 2023Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆22Oct 30, 2022Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 2 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- Bayesian network plot for the enrichment analysis results☆67Oct 2, 2024Updated last year
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- trajectory inference☆107Jan 27, 2025Updated last year
- ☆43Jun 11, 2022Updated 3 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- ☆14Apr 2, 2025Updated 11 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Oct 5, 2023Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 7 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Oct 23, 2024Updated last year
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated last year