ImXman / MACA
MACA: Marker-based automatic cell-type annotation for single cell expression data
☆25Updated last year
Alternatives and similar repositories for MACA:
Users that are interested in MACA are comparing it to the libraries listed below
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- ☆30Updated 2 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆45Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Code used to process the data of the HBCA project☆25Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- ☆25Updated 3 years ago
- ☆40Updated 3 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 6 months ago
- ☆19Updated 9 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆37Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆18Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- ☆15Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago