theislab / neural_organoid_atlasLinks
Reproducibility repository for the Human Neural Organoid Atlas publication
☆42Updated last year
Alternatives and similar repositories for neural_organoid_atlas
Users that are interested in neural_organoid_atlas are comparing it to the libraries listed below
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- ☆62Updated 2 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- ☆40Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆20Updated last year
- R implementation of GeneTrajectory☆68Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- ☆34Updated 2 months ago
- ☆46Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆48Updated 2 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago