theislab / neural_organoid_atlas
Reproducibility repository for the Human Neural Organoid Atlas publication
☆32Updated 4 months ago
Alternatives and similar repositories for neural_organoid_atlas:
Users that are interested in neural_organoid_atlas are comparing it to the libraries listed below
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆46Updated 3 weeks ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆17Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Whole mouse brain snATAC seq analysis☆25Updated 2 weeks ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- ☆43Updated last year
- ☆50Updated 7 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 11 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 6 months ago
- ☆12Updated 3 years ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- ☆30Updated 2 years ago
- ☆32Updated 8 months ago
- ☆15Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- ☆55Updated last year
- Accurate and fast cell marker gene identification with COSG☆44Updated last month
- ☆34Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Construct Tumor Transition Zone Microenvironment☆42Updated 5 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆22Updated 3 weeks ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago