Reproducibility repository for the Human Neural Organoid Atlas publication
☆53Dec 16, 2024Updated last year
Alternatives and similar repositories for neural_organoid_atlas
Users that are interested in neural_organoid_atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolbox of the Human Neural Organoid Cell Atlas☆35Oct 19, 2026Updated last week
- ☆29Apr 1, 2025Updated last year
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆26Jun 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- ☆11Jun 9, 2026Updated 4 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆15Oct 11, 2021Updated 5 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Analysis for BICCN cross-species primary motor cortex project☆24Feb 13, 2024Updated 2 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆40Aug 2, 2021Updated 5 years ago
- Cytograph version used for adult human-brain analysis☆103Jun 5, 2026Updated 4 months ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆17Sep 24, 2024Updated 2 years ago
- ☆46Sep 10, 2026Updated last month
- ☆20Oct 17, 2024Updated 2 years ago
- CellPolaris☆15Jan 11, 2026Updated 9 months ago
- ☆13Jan 27, 2025Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆21Jan 18, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- ☆28Apr 9, 2025Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆37Jan 4, 2022Updated 4 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- ☆19Mar 31, 2024Updated 2 years ago
- ☆12Oct 4, 2021Updated 5 years ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆13Aug 30, 2024Updated 2 years ago
- ☆41Aug 4, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Integration of gut cell atlases☆42May 6, 2026Updated 5 months ago
- ☆17Mar 11, 2023Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life☆53Apr 9, 2025Updated last year
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 3 years ago
- A Method for Mapping Single-cell and Spatial Transcriptomics Data with Transfer Learning☆13Nov 17, 2023Updated 2 years ago