cross-species analysis of cell identities, markers and regulations
☆13Jul 11, 2025Updated last year
Alternatives and similar repositories for CACIMAR
Users that are interested in CACIMAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Nov 3, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- weighted indexes for clustering evaluation☆16Apr 18, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago
- ☆11Dec 4, 2023Updated 2 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- ☆15Jun 13, 2025Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 8 months ago
- ☆18Mar 31, 2023Updated 3 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Feb 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆22Updated this week
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- Functional Inference of Gene Regulation☆56Jul 5, 2024Updated 2 years ago
- ☆23Dec 23, 2024Updated last year
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- TF Binding and Expression Target Analysis 2☆22Nov 19, 2025Updated 10 months ago
- Pre-clinical drug discovery faces the low efficiency dilemma. One of the reasons is the lack of cross-drug efficacy evaluation infrastruc…☆14Dec 8, 2025Updated 10 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 8 months ago
- Reproducible Reporting with R (R3) training materials for marine ecosystem indicators☆13Sep 7, 2021Updated 5 years ago
- Identifying tumor cells at the single-cell level using machine learning☆51Nov 10, 2024Updated last year
- Segmentation-free Analysis of In Situ Capture data☆15Updated this week
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆26Jul 12, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Example data for R/qtl2☆13May 29, 2026Updated 4 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- weather similarity page☆11May 25, 2021Updated 5 years ago
- scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier☆49Apr 12, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆206Jan 30, 2026Updated 8 months ago