jiang-junyao / CACIMARLinks
cross-species analysis of cell identities, markers and regulations
☆12Updated 5 months ago
Alternatives and similar repositories for CACIMAR
Users that are interested in CACIMAR are comparing it to the libraries listed below
Sorting:
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Tools for assessing clustering robustness☆28Updated 3 months ago
- ☆25Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆22Updated 2 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Gene Expression Decomposition and Integration☆19Updated 9 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆12Updated 4 years ago
- ☆20Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆23Updated 2 months ago
- ☆39Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆22Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆16Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- Querying cellular states and programs by learning representations of gene sets☆14Updated last month
- Trends in single cell papers☆16Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 2 months ago
- ☆27Updated 3 years ago