Alternatives and similar repositories for mubind:

Users that are interested in mubind are comparing it to the libraries listed below

• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆23Updated 3 weeks ago
• ajaynadig / TRADEtools
  ☆17Updated last month
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated last month
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆19Updated 3 months ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆13Updated last year
• almaan / eggplant
  ☆21Updated 2 years ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated last month
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 3 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated 11 months ago
• viannegao / ChromaFold
  ☆26Updated 7 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆49Updated this week
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated last month
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 6 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆21Updated 3 weeks ago
• Teichlab / sctk
  ☆36Updated 7 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆9Updated 2 years ago
• GreenleafLab / Brain_ASD
  ☆10Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• theislab / cross_system_integration
  ☆12Updated last month