theislab / mubindLinks
Learning motif contributions to cell transitions using sequence features and graphs.
☆28Updated 11 months ago
Alternatives and similar repositories for mubind
Users that are interested in mubind are comparing it to the libraries listed below
Sorting:
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 4 months ago
- Information-based dimensionality reduction☆30Updated 7 months ago
- A python package for chromVAR☆28Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 6 months ago
- ☆22Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆27Updated 10 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆18Updated 4 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆14Updated last year
- ☆26Updated 2 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- ☆27Updated last month
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- GREAT algorithm in Python☆14Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆59Updated 10 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year