Alternatives and similar repositories for mubind:

Users that are interested in mubind are comparing it to the libraries listed below

• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆13Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated 2 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• almaan / eggplant
  ☆21Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated 3 weeks ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• theislab / cross_system_integration
  ☆12Updated last week
• Teichlab / sctk
  ☆36Updated 6 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 6 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆9Updated 2 years ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated last month
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆22Updated 3 weeks ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆32Updated 9 months ago
• mukamel-lab / SingleCellFusion
  SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
  ☆12Updated 3 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated last week
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆16Updated 9 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated this week