Alternatives and similar repositories for DeepCycle

Users that are interested in DeepCycle are comparing it to the libraries listed below

• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆107Updated 8 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆74Updated 2 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 7 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• xiaoyeye / TFvelo
  ☆44Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated 11 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆105Updated 2 months ago
• YosefLab / popV
  ☆76Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆42Updated 3 years ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 3 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated last month
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆44Updated this week
• bowang-lab / DeepVelo
  ☆47Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆76Updated 5 months ago
• snehamitra / SCARlink
  ☆51Updated 8 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆109Updated 3 weeks ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆129Updated 3 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆49Updated 3 weeks ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆110Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆61Updated last year
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆101Updated 8 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆53Updated 4 months ago