andreariba / DeepCycleLinks
Cell cycle inference in single-cell RNA-seq
☆50Updated 2 years ago
Alternatives and similar repositories for DeepCycle
Users that are interested in DeepCycle are comparing it to the libraries listed below
Sorting:
- Multi-omic velocity inference☆116Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- ☆47Updated last year
- R implementation of GeneTrajectory☆69Updated last year
- ☆46Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated 2 months ago
- Single cell omics biology annotations☆51Updated 9 months ago
- ☆87Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- ☆123Updated 8 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆80Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆84Updated 10 months ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago
- ☆14Updated 2 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Updated 7 months ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆117Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- Gene group activity utility functions for Scanpy☆100Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆86Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆33Updated 2 months ago