andreariba / DeepCycleLinks
Cell cycle inference in single-cell RNA-seq
☆46Updated 2 years ago
Alternatives and similar repositories for DeepCycle
Users that are interested in DeepCycle are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆69Updated last year
- R implementation of GeneTrajectory☆59Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆107Updated 9 months ago
- ☆47Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆78Updated this week
- ☆45Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆43Updated 3 years ago
- Multi-omic velocity inference☆110Updated 8 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated this week
- Single cell omics biology annotations☆51Updated 2 months ago
- ☆54Updated this week
- A tool for semi-automatic cell type harmonization and integration☆107Updated 3 months ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- inferring regulatory cellular dynamics☆48Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 7 months ago
- ☆42Updated 2 weeks ago
- trajectory inference☆103Updated 5 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 4 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆50Updated 2 weeks ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆50Updated 11 months ago
- Non-parametric density inference for single-cell analysis.☆71Updated last month