andreariba / DeepCycleLinks
Cell cycle inference in single-cell RNA-seq
☆51Updated 2 years ago
Alternatives and similar repositories for DeepCycle
Users that are interested in DeepCycle are comparing it to the libraries listed below
Sorting:
- Multi-omic velocity inference☆113Updated last year
- ☆46Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆115Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- Python implementation of the Slingshot pseudotime algorithm☆66Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- ☆84Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- ☆45Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- ☆119Updated 6 months ago
- Single cell omics biology annotations☆50Updated 7 months ago
- A tool for semi-automatic cell type harmonization and integration☆115Updated 3 weeks ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 3 weeks ago
- inferring regulatory cellular dynamics☆60Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- End-to-end analysis of spatial multi-omics data☆96Updated 3 weeks ago
- ☆59Updated 5 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 6 months ago