Alternatives and similar repositories for DeepCycle:

Users that are interested in DeepCycle are comparing it to the libraries listed below

• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 10 months ago
• xiaoyeye / TFvelo
  ☆44Updated 10 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆19Updated last month
• YosefLab / velovi
  ☆39Updated this week
• bowang-lab / DeepVelo
  ☆47Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆53Updated 11 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆101Updated 5 months ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆37Updated last week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆59Updated 6 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆35Updated last month
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated this week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• snehamitra / SCARlink
  ☆50Updated 6 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆69Updated 2 months ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆67Updated 2 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆63Updated 3 weeks ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆64Updated this week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆38Updated 2 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 3 months ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆59Updated 10 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆21Updated 2 months ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated 3 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆40Updated 3 years ago
• dpeerlab / ENVI
  ☆45Updated 4 months ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆23Updated 3 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆67Updated this week