Repository for the clone2vec python package
☆15Mar 19, 2026Updated this week
Alternatives and similar repositories for clone2vec
Users that are interested in clone2vec are comparing it to the libraries listed below
Sorting:
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 8 months ago
- ☆12Jan 29, 2025Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated this week
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Dimensionality reduction and batch integration methods for single cell data☆16Feb 9, 2023Updated 3 years ago
- Split-Pane Dash component, can be nested or split vertically or horizontally!☆14Mar 2, 2023Updated 3 years ago
- Workshop for building a Decentralised Market☆13Apr 28, 2016Updated 9 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- The Monod package fits CME models to sequencing data.☆33Mar 12, 2026Updated last week
- ☆36Feb 20, 2026Updated last month
- Spatial analysis of FISH data☆33May 20, 2025Updated 10 months ago
- Prism themes for plotnine, inspired by ggprism.☆16Aug 13, 2025Updated 7 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Sep 2, 2025Updated 6 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- ☆16May 25, 2021Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆17Oct 4, 2025Updated 5 months ago
- ☆12Jun 12, 2019Updated 6 years ago
- ☆11Sep 4, 2025Updated 6 months ago
- ☆26Dec 25, 2023Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆86Mar 20, 2025Updated last year
- ☆20Feb 27, 2026Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆87Jun 24, 2024Updated last year
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- Chart.js plugin to select points on a chart with a click-and-drag box☆16Aug 5, 2021Updated 4 years ago
- ☆15Jan 10, 2021Updated 5 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Nov 24, 2018Updated 7 years ago
- Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in larg…☆18Aug 15, 2023Updated 2 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- Benchmarking analysis of data integration tools☆408Sep 17, 2025Updated 6 months ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 10 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago