Alternatives and similar repositories for Noack_et_al_NatNeuro2021

Users that are interested in Noack_et_al_NatNeuro2021 are comparing it to the libraries listed below

• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• EngreitzLab / ABC-GWAS-Paper
  Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021
  ☆15Updated 4 years ago
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 3 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 4 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• MillerLab-CPHG / Coronary_snATAC
  ☆12Updated 3 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 5 months ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆23Updated 3 years ago
• RebuffetLucas / Meta_NK_Project
  ☆10Updated last month
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 11 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated last week
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 2 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated last year
• YutingPKU / Bulk_RNA-Seq_Workflow_Snakemake
  STAR, cufflinks, cluster, DESeq2, GO analysis
  ☆14Updated 5 years ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆19Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆21Updated last year