GreenleafLab / brainchromatinLinks
Code used to analyze single cell RNA and ATAC sequencing in developing human brain
☆35Updated 4 years ago
Alternatives and similar repositories for brainchromatin
Users that are interested in brainchromatin are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆61Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Updated 2 years ago
- ☆62Updated last month
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- ☆26Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- ☆30Updated 9 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- ☆63Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated 3 weeks ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- ☆10Updated 2 years ago