GreenleafLab / brainchromatinLinks
Code used to analyze single cell RNA and ATAC sequencing in developing human brain
☆34Updated 3 years ago
Alternatives and similar repositories for brainchromatin
Users that are interested in brainchromatin are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆26Updated 2 years ago
- ☆10Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆13Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling