theislab / moslin
Code, data and analysis for moslin.
☆12Updated 5 months ago
Alternatives and similar repositories for moslin:
Users that are interested in moslin are comparing it to the libraries listed below
- ☆15Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- ☆26Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆11Updated 6 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- Landscape Single Cell Entropy☆19Updated 4 years ago
- ☆9Updated 8 months ago
- ☆19Updated 10 months ago
- ☆9Updated last year
- scVI extension for unspliced RNA☆16Updated 2 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- ☆12Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆17Updated 7 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last month
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Gene Expression Decomposition and Integration☆17Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- scID☆13Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- ☆26Updated last year
- ☆15Updated 6 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆21Updated last month
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago