Dynamical systems methods for RNA velocity analysis
☆24May 19, 2021Updated 5 years ago
Alternatives and similar repositories for velodyn
Users that are interested in velodyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 16, 2021Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 5 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 3 months ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- LoRA finetuned LLM for single cell genomics research☆33Jun 30, 2026Updated 3 months ago
- ☆11Dec 4, 2023Updated 2 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Must-read papers on deep learning based methodology paper for single cell data analysis☆19Apr 18, 2021Updated 5 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 8 months ago
- ☆16Feb 11, 2024Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆511Oct 8, 2026Updated last week
- ☆33Apr 12, 2023Updated 3 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14Jul 28, 2023Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆458Updated this week
- Multiome GRN inference.☆145Updated this week
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated 2 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 10, 2026Updated 2 months ago
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆29Dec 25, 2023Updated 2 years ago
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- Multi-omic velocity inference☆123Oct 23, 2024Updated last year