calico / velodynView external linksLinks
Dynamical systems methods for RNA velocity analysis
☆24May 19, 2021Updated 4 years ago
Alternatives and similar repositories for velodyn
Users that are interested in velodyn are comparing it to the libraries listed below
Sorting:
- ☆12Apr 16, 2021Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- ☆19Mar 8, 2023Updated 2 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- ☆11Feb 18, 2019Updated 6 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Jan 20, 2025Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Jan 10, 2024Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- Multiome GRN inference.☆135Apr 19, 2024Updated last year
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Feb 6, 2026Updated last week
- Learn single-cell dynamics using neural differential equations☆57Jan 6, 2026Updated last month
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 weeks ago
- ☆10Sep 27, 2022Updated 3 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 5 years ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆490Feb 7, 2026Updated last week
- ☆28Feb 6, 2019Updated 7 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated last year
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 3 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- ☆29Apr 12, 2023Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Jan 23, 2026Updated 3 weeks ago
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆427Updated this week
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 9 months ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year