scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).
☆33Aug 20, 2025Updated 10 months ago
Alternatives and similar repositories for scDoRI
Users that are interested in scDoRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jun 22, 2026Updated last week
- ☆12Nov 20, 2023Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆116May 15, 2026Updated last month
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Causal discovery of gene regulatory programs from single-cell genomics☆19Sep 5, 2025Updated 9 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- ☆11Apr 25, 2026Updated 2 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆32Updated this week
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 11 months ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 11 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆40Jun 7, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆23Mar 22, 2023Updated 3 years ago
- ☆43Nov 26, 2025Updated 7 months ago
- ☆12Dec 23, 2025Updated 6 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- Python client for the OmniPath web service☆62Feb 19, 2026Updated 4 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆87Mar 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆20Jun 12, 2024Updated 2 years ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Jun 22, 2026Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Cytograph version used for adult human-brain analysis☆98Jun 5, 2026Updated 3 weeks ago
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- ☆18Mar 31, 2024Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated 2 months ago
- ☆13Aug 9, 2022Updated 3 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Learning cell communication from spatial graphs of cells☆118Jan 15, 2024Updated 2 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago