Alternatives and similar repositories for BigSur

Users that are interested in BigSur are comparing it to the libraries listed below

• ScialdoneLab / CIARA
  CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…
  ☆15Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 6 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated last year
• UPSUTER / GEMLI
  ☆30Updated 3 months ago
• gxiaolab / scAllele
  ☆33Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆40Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• edroaldo / fusca
  Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …
  ☆19Updated 2 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• KlugerLab / DAseq
  ☆40Updated 4 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆20Updated last year
• lkmklsmn / MitoTrace
  ☆17Updated 11 months ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• nghiavtr / SCmut
  ☆32Updated 5 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• favilaco / deconv_matching_bulk_scnRNA
  Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
  ☆15Updated last year
• lhe17 / nebula
  ☆41Updated last month
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆22Updated 2 weeks ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 5 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆25Updated last month
• PoolLab / generecovery
  ☆29Updated 2 years ago
• morris-lab / CellTagR
  This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
  ☆21Updated 2 years ago