welch-lab / pyligerLinks
Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
☆30Updated 4 months ago
Alternatives and similar repositories for pyliger
Users that are interested in pyliger are comparing it to the libraries listed below
Sorting:
- Single cell omics biology annotations☆51Updated 5 months ago
- CAST package☆40Updated 11 months ago
- Spatially resolved transcriptomic analysis☆60Updated 2 years ago
- ☆26Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆54Updated 11 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- ☆56Updated 4 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- ☆20Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆72Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- ☆46Updated last year
- ☆30Updated 2 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 weeks ago
- ☆13Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- Information-based dimensionality reduction☆29Updated 9 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- Python implementation of the Slingshot pseudotime algorithm☆64Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- spatial transcriptome, single cell☆70Updated 2 years ago