Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
☆30May 16, 2025Updated 10 months ago
Alternatives and similar repositories for pyliger
Users that are interested in pyliger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 18, 2026Updated last week
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 11 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆44Jul 10, 2024Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Spatial alignment of single cell transcriptomic data.☆359Jul 1, 2025Updated 8 months ago
- Repository for the clone2vec python package☆15Mar 19, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 7 months ago
- Scripts capable of re-creating figures from Van Valen Lab publications☆18May 9, 2022Updated 3 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- CellRank's reproducibility repository.☆16Jan 13, 2022Updated 4 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆14Mar 11, 2022Updated 4 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆259Feb 13, 2026Updated last month
- trajectory inference☆107Jan 27, 2025Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago