welch-lab / pyligerLinks
Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
☆30Updated 3 months ago
Alternatives and similar repositories for pyliger
Users that are interested in pyliger are comparing it to the libraries listed below
Sorting:
- Single cell omics biology annotations☆51Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- ☆26Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 5 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- CAST package☆40Updated 10 months ago
- ☆54Updated 10 months ago
- ☆59Updated last year
- ☆55Updated 3 months ago
- Spatially resolved transcriptomic analysis☆59Updated 2 years ago
- ☆40Updated last week
- ☆30Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆20Updated this week
- ☆13Updated last week
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week
- ☆50Updated 3 months ago
- Python implementation of the Slingshot pseudotime algorithm☆64Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Multi-omic velocity inference☆110Updated 10 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated this week
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- ☆45Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month