☆26Dec 25, 2023Updated 2 years ago
Alternatives and similar repositories for cospar
Users that are interested in cospar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 3 months ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆53Jan 20, 2025Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- ☆16May 23, 2022Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 2 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆44Sep 18, 2025Updated 7 months ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆19Mar 31, 2023Updated 3 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- ☆10Oct 15, 2025Updated 6 months ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆490Apr 23, 2026Updated last week
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- ☆67Jul 13, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Multiome GRN inference.☆135Apr 10, 2026Updated 3 weeks ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Jul 28, 2023Updated 2 years ago
- Single-cell Case Control Analysis☆56Feb 26, 2026Updated 2 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆33Updated this week
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Tutorials on using latest dynamo package☆27Dec 21, 2025Updated 4 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago