AllonKleinLab / cospar
☆26Updated last year
Alternatives and similar repositories for cospar:
Users that are interested in cospar are comparing it to the libraries listed below
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆20Updated last week
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- CAST package☆33Updated 5 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- ☆39Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- ☆46Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆27Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆25Updated 3 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆32Updated 9 months ago
- ☆36Updated 6 months ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Benchmark of GRNs using the GRETA pipeline☆23Updated 3 weeks ago
- inferring regulatory cellular dynamics☆36Updated 2 weeks ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Single cell omics biology annotations☆51Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- ☆27Updated 5 months ago
- A python package for chromVAR☆27Updated last year