scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
☆46Sep 20, 2024Updated last year
Alternatives and similar repositories for scMEGA
Users that are interested in scMEGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- ☆15Jun 4, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆32Dec 29, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- scAB detects multiresolution cell states with clinical significance☆23Nov 14, 2022Updated 3 years ago
- ☆37Sep 2, 2022Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- ☆24Jul 9, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- comprehensive analysis of single-cell transcriptomics data☆25Jul 14, 2026Updated last week
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 3 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Biological Network Integration using Convolutions☆66Jan 17, 2024Updated 2 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Jun 23, 2026Updated 3 weeks ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆17Apr 8, 2021Updated 5 years ago
- ☆132Jul 11, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R functions underlying OmicsNet☆20Updated this week
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆43Jul 20, 2025Updated last year
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- ☆32Apr 9, 2022Updated 4 years ago
- Methods for decontamination of single cell data☆65Feb 16, 2025Updated last year
- ☆17Apr 2, 2023Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆29Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cellsnake tool main repo☆35Feb 22, 2024Updated 2 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- ☆10Dec 4, 2023Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆33Jun 24, 2024Updated 2 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆68Jul 8, 2025Updated last year
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year