CostaLab / scMEGALinks
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
☆40Updated 10 months ago
Alternatives and similar repositories for scMEGA
Users that are interested in scMEGA are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆55Updated last year
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆36Updated last year
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated 3 weeks ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 10 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆53Updated 9 months ago
- ☆57Updated last year
- scWGCNA☆61Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- ☆52Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 3 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated 2 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ACTIONet single-cell analysis framework☆42Updated 10 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Low-dimensional Projection of Single Cell Velocity☆28Updated 2 years ago
- ☆26Updated 3 years ago