CostaLab / scMEGALinks
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
☆42Updated last year
Alternatives and similar repositories for scMEGA
Users that are interested in scMEGA are comparing it to the libraries listed below
Sorting:
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- ☆60Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- ☆60Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆39Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆27Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- scWGCNA☆61Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- ☆39Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆53Updated 2 years ago
- ☆32Updated 8 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 3 months ago