CostaLab / scMEGALinks
scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
☆43Updated last year
Alternatives and similar repositories for scMEGA
Users that are interested in scMEGA are comparing it to the libraries listed below
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆61Updated 2 years ago
- ☆61Updated 4 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated 2 years ago
- R implementation of GeneTrajectory☆69Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- ☆56Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆53Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago