davemcg / scEiaD
Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
☆24Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for scEiaD
- ☆29Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- ☆27Updated 3 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- ☆40Updated 3 months ago
- scover☆22Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- ☆29Updated 5 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆13Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Collection of useful methods for single cell analysis☆14Updated 2 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆20Updated last year