Alternatives and similar repositories for VITAE

Users that are interested in VITAE are comparing it to the libraries listed below

• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆52Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 3 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 6 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 9 months ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆65Updated 5 years ago
• bioFAM / scDoRI
  scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…
  ☆29Updated 5 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 2 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• YosefLab / velovi
  ☆41Updated 2 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆44Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• YosefLab / SymSim
  ☆27Updated last year
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 8 months ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆28Updated 4 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 10 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆35Updated 4 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆40Updated 2 years ago
• AllonKleinLab / cospar
  ☆26Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated last year
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆17Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆31Updated this week
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆95Updated last year
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆73Updated 8 months ago