Alternatives and similar repositories for VITAE:

Users that are interested in VITAE are comparing it to the libraries listed below

• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 3 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• PeterZZQ / CellPath
  ☆21Updated 2 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• cliffzhou92 / MuTrans-release
  ☆15Updated 3 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• YosefLab / SymSim
  ☆25Updated 6 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 3 weeks ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated 2 weeks ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated 10 months ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆13Updated last year
• gitter-lab / SINGE
  Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
  ☆11Updated 9 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• soedinglab / prosstt
  PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
  ☆26Updated last year
• KlugerLab / SIMVI
  ☆10Updated 3 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 6 months ago
• caokai1073 / Pamona
  The software of Pamona, a partial manifold alignment algorithm.
  ☆19Updated 4 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated last week
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• AllonKleinLab / paper-data
  ☆20Updated last week
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 7 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• altoslabs / perturbench
  ☆25Updated 3 months ago
• suinleelab / contrastiveVI
  ☆54Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago