Alternatives and similar repositories for VITAE:

Users that are interested in VITAE are comparing it to the libraries listed below

• zsteve / gWOT
  Global Waddington-OT
  ☆21Updated 5 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• caokai1073 / Pamona
  The software of Pamona, a partial manifold alignment algorithm.
  ☆19Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆39Updated last year
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆44Updated 6 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆11Updated 7 months ago
• AllonKleinLab / paper-data
  ☆19Updated 2 weeks ago
• cliffzhou92 / MuTrans-release
  ☆14Updated 3 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• scverse / simple-scvi
  Simple scVI implementation
  ☆10Updated 3 weeks ago
• AllonKleinLab / cospar
  ☆26Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆25Updated 4 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆13Updated last month
• gitter-lab / SINGE
  Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
  ☆11Updated 6 months ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆36Updated last year
• theislab / moslin
  Code, data and analysis for moslin.
  ☆12Updated 3 months ago
• sqjin / scEpath
  An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
  ☆16Updated 3 years ago
• YosefLab / velovi
  ☆39Updated last week
• calico / scmmd
  Maximum mean discrepancy comparisons for single cell profiling experiments
  ☆15Updated 2 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 2 years ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆14Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated 2 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆24Updated 2 months ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆29Updated 2 years ago
• SONGDONGYUAN1994 / PseudotimeDE
  A robust DE test method that accounts for the uncertainty in pseudotime inference
  ☆33Updated this week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated last week