Alternatives and similar repositories for prescient:

Users that are interested in prescient are comparing it to the libraries listed below

• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated this week
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆63Updated 3 weeks ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 9 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 10 months ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last week
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆109Updated last year
• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆24Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated last week
• AllonKleinLab / cospar
  ☆26Updated last year
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆31Updated 8 months ago
• snehamitra / SCARlink
  ☆50Updated 6 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated last month
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆37Updated last week
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆58Updated 2 years ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆48Updated 8 months ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 6 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 4 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆38Updated 2 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆59Updated 6 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 5 months ago
• xiaoyeye / TFvelo
  ☆44Updated 10 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆67Updated this week