Alternatives and similar repositories for PrimerDesign

Users that are interested in PrimerDesign are comparing it to the libraries listed below

• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated last year
• NYU-BFX / RNA-Seq_Standard
  ☆11Updated 7 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 4 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 6 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• MarioniLab / CELLOseq
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆11Updated last year
• researchapps / polysolver
  Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…
  ☆14Updated 9 years ago
• amf71 / ECLIPSE
  ☆11Updated 2 years ago
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated last week
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆17Updated 6 months ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 5 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 5 years ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• cruk-mi / mesa
  mesa package for Methylation Enrichment Sequencing Analysis
  ☆15Updated 2 months ago
• VanLoo-lab / CAMDAC
  ☆11Updated 4 months ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 4 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• epigen / scifiRNA-seq
  ☆12Updated 5 years ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 5 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆26Updated 5 months ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• nghiavtr / FuSeq_WES
  ☆14Updated 2 years ago
• ijustwanthaveaname / Genefamily_pipeline
  A pipeline to identify gene family using mutiple tools and scripts.
  ☆11Updated 4 years ago