veltenlab / PrimerDesignLinks
Package to design primers for MutaSeq and related methods
☆11Updated 4 years ago
Alternatives and similar repositories for PrimerDesign
Users that are interested in PrimerDesign are comparing it to the libraries listed below
Sorting:
- Whole genome workflows☆12Updated 9 months ago
- ☆11Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated last month
- Long read to rMATS☆32Updated 2 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆12Updated 2 years ago
- ☆11Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- CircSplice☆12Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- fastx-utils using klib☆19Updated 4 years ago
- ☆13Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 8 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆11Updated 3 months ago
- R Package for phasing of single cell Strand-seq data☆10Updated 7 months ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 4 years ago
- End-guided RNA assembler☆15Updated last week
- A pipeline to identify gene family using mutiple tools and scripts.☆11Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 2 weeks ago
- ☆12Updated 4 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆12Updated 8 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago