rargelaguet / mouse_organogenesis_10x_multiome_publicationLinks
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
☆40Updated 3 years ago
Alternatives and similar repositories for mouse_organogenesis_10x_multiome_publication
Users that are interested in mouse_organogenesis_10x_multiome_publication are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- Single cell omics biology annotations☆51Updated 5 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆59Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Multi-resolution Variational Inference☆22Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 5 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- ☆20Updated this week
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Multi-omic velocity inference☆111Updated 11 months ago
- ☆54Updated 11 months ago