tanaylab / embflowLinks
☆12Updated 2 years ago
Alternatives and similar repositories for embflow
Users that are interested in embflow are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- ☆16Updated last year
- python API to the CoGAPS NMF package☆19Updated 2 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- The million-scale method for single-cell analysis☆10Updated 2 years ago
- ☆10Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆11Updated last year
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆12Updated 4 years ago
- Gene Expression Decomposition and Integration☆18Updated 5 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆12Updated 2 years ago
- ☆12Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆17Updated 2 years ago
- ☆12Updated 5 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆12Updated 2 years ago
- scGRO-seq analyses codes☆13Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 9 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆12Updated last year
- represent each cell in UMAP plots as a pie chart☆17Updated 3 years ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Scripts used to analyse EPICC ATAC-Seq data☆9Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago