tanaylab / embflow
☆12Updated 2 years ago
Alternatives and similar repositories for embflow:
Users that are interested in embflow are comparing it to the libraries listed below
- ☆12Updated 3 years ago
- ☆16Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 3 months ago
- ☆15Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- ☆12Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- scripts for analyzing data of macrophage development in human☆10Updated 5 years ago
- ☆11Updated last year
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆9Updated 8 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆11Updated last year
- ☆10Updated 2 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Code, data and analysis for moslin.☆12Updated 5 months ago
- python API to the CoGAPS NMF package☆18Updated last year
- scGRO-seq analyses codes☆12Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆18Updated 8 months ago
- ☆15Updated 6 months ago
- A gene expression signature scoring Python package.☆13Updated 3 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆10Updated 2 years ago