☆36Apr 16, 2025Updated 10 months ago
Alternatives and similar repositories for CINEMA-OT
Users that are interested in CINEMA-OT are comparing it to the libraries listed below
Sorting:
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 3 weeks ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆169Feb 25, 2025Updated last year
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆24Jan 14, 2026Updated last month
- ☆16Sep 1, 2023Updated 2 years ago
- ☆17Jul 12, 2024Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 3 weeks ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 4 months ago
- Single-cell perturbation analysis☆289Updated this week
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 9 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆32Mar 14, 2025Updated 11 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month
- ☆10Dec 4, 2023Updated 2 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆135Aug 14, 2024Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆84Apr 21, 2025Updated 10 months ago
- R implementation of GeneTrajectory☆68Apr 5, 2024Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆159Oct 31, 2024Updated last year
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 9 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data☆10Jan 29, 2020Updated 6 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- Post hoc inference via multiple testing☆12Nov 2, 2025Updated 4 months ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- ☆15Feb 6, 2026Updated last month
- ☆11Aug 21, 2024Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- ☆17May 23, 2025Updated 9 months ago
- ☆10Mar 25, 2025Updated 11 months ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- ☆11Jul 8, 2024Updated last year
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago