Alternatives and similar repositories for CINEMA-OT

Users that are interested in CINEMA-OT are comparing it to the libraries listed below

• suinleelab / contrastiveVI
  ☆56Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• altoslabs / perturbench
  ☆42Updated 4 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 2 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆54Updated 2 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 11 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆111Updated last year
• nitzanlab / biolord
  ☆84Updated last year
• SabbaghCodes / ImbalancedLearningForSingleCellFoundationModels
  Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…
  ☆13Updated 9 months ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 4 months ago
• yutongo / TIGON
  ☆48Updated 6 months ago
• Genentech / pascient
  ☆17Updated 5 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆18Updated 4 months ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 7 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆33Updated 2 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• theislab / scTab
  ☆61Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 3 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• Roy-lab / scMTNI
  ☆30Updated 2 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆103Updated this week
• Genentech / sVAE
  ☆63Updated 2 years ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆30Updated this week
• bowang-lab / DeepVelo
  ☆46Updated last year
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆60Updated 5 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• SchubertLab / mvTCR
  ☆54Updated 11 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆49Updated 8 months ago