☆37Apr 16, 2025Updated 11 months ago
Alternatives and similar repositories for CINEMA-OT
Users that are interested in CINEMA-OT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated last month
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆170Feb 25, 2025Updated last year
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆25Updated this week
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆17Jul 12, 2024Updated last year
- ☆18Feb 19, 2026Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Oct 31, 2025Updated 4 months ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 10 months ago
- ☆17May 23, 2025Updated 10 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆164Oct 31, 2024Updated last year
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Single-cell perturbation analysis☆297Updated this week
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆33Aug 13, 2024Updated last year
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆32Mar 14, 2025Updated last year
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 8 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- ☆10Dec 8, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆29Sep 4, 2023Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆191Jan 30, 2026Updated last month
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆20Jul 7, 2022Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 4 months ago
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated 2 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 10 months ago
- R implementation of GeneTrajectory☆68Apr 5, 2024Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆140Aug 14, 2024Updated last year
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Single-cell perturbation effects prediction benchmark☆74Jan 6, 2026Updated 2 months ago
- ☆12Apr 16, 2021Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data☆10Jan 29, 2020Updated 6 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆116Sep 29, 2025Updated 5 months ago
- single-cell decorrelated module networks☆31Aug 24, 2024Updated last year
- ☆11Aug 21, 2024Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆83Apr 21, 2025Updated 11 months ago