Alternatives and similar repositories for CINEMA-OT:

Users that are interested in CINEMA-OT are comparing it to the libraries listed below

• Roy-lab / scMTNI
  ☆23Updated 2 weeks ago
• altoslabs / perturbench
  ☆21Updated last week
• theislab / scTab
  ☆56Updated 4 months ago
• bm2-lab / scMVP
  ☆28Updated 3 months ago
• suinleelab / contrastiveVI
  ☆51Updated 9 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆40Updated this week
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 3 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆56Updated 2 years ago
• Teichlab / limbcellatlas
  This repository contains codes used for the human fetal limb cell atlas.
  ☆13Updated 4 months ago
• theislab / prophet
  ☆27Updated 3 weeks ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆31Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆36Updated 4 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆34Updated last month
• YosefLab / velovi
  ☆39Updated this week
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆21Updated 5 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated this week
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆25Updated 4 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆20Updated 2 months ago
• yutongo / TIGON
  ☆34Updated 11 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆24Updated 2 weeks ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated 3 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆39Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 8 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆14Updated 3 months ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆14Updated 2 months ago