Rust implementation of Flavia95's GFAtoVCF
☆16Jan 17, 2022Updated 4 years ago
Alternatives and similar repositories for rs-gfatovcf
Users that are interested in rs-gfatovcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- Library for the Handle Graph abstraction☆25Updated this week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 6 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- ☆46Apr 18, 2026Updated 3 months ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆30Jun 23, 2026Updated last month
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago