Alternatives and similar repositories for rs-gfatovcf

Users that are interested in rs-gfatovcf are comparing it to the libraries listed below

• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated this week
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆17Updated 3 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• chfi / gfainject
  ☆17Updated 2 years ago
• pangenome / povu
  A toolkit for exploring regions of variation in a variation graph
  ☆12Updated 3 weeks ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 8 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆23Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated last year
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 6 months ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆10Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• chfi / rs-handlegraph
  Rust implementation of VG handle graph
  ☆19Updated last year
• MoinSebi / gfa2bin
  ☆27Updated 4 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆28Updated last year
• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• chfi / rs-gfa-utils
  ☆15Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆38Updated last year
• chfi / pafview
  ☆17Updated 10 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆23Updated 3 weeks ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated 2 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated 11 months ago