HopedWall / rs-gfatovcf
Rust implementation of Flavia95's GFAtoVCF
☆16Updated 3 years ago
Alternatives and similar repositories for rs-gfatovcf:
Users that are interested in rs-gfatovcf are comparing it to the libraries listed below
- sequence to graph mapper☆11Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆21Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- Rust implementation of VG handle graph☆20Updated last year
- ☆15Updated last year
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- pangenome from maximal blocks in an MSA☆11Updated 5 months ago
- the pangenome graph evaluator☆25Updated 3 years ago
- GBWT in Rust☆42Updated 3 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Optimal sequence-to-graph alignment with recombinations☆28Updated this week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- ☆17Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- General purpose utility related to GAF files☆22Updated last month
- Extracting paths from assembly graphs☆22Updated 10 months ago
- Long-read aligner to pangenome graphs☆26Updated 9 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆33Updated last month
- ☆15Updated 3 years ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- A web-based, interactive pangenome visualization tool☆21Updated last year
- Convert HAL to VG☆21Updated 6 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 10 months ago
- Statistics and analysis for variation graphs☆38Updated 2 months ago