Alternatives and similar repositories for rs-gfatovcf:

Users that are interested in rs-gfatovcf are comparing it to the libraries listed below

• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 4 years ago
• chfi / rs-handlegraph
  Rust implementation of VG handle graph
  ☆20Updated last year
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 3 weeks ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 6 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 4 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 2 months ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• chfi / gfainject
  ☆15Updated last year
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 6 months ago
• AlgoLab / pangeblocks
  pangenome from maximal blocks in an MSA
  ☆11Updated 7 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 5 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆39Updated 4 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆24Updated last week
• thegenemyers / GENESCOPE.FK
  A derivative of GenomeScope2.0 modified to work with FastK
  ☆9Updated last year
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 10 months ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated 2 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 6 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago