chfi / rs-gfaLinks
GFA parser in Rust
☆30Updated 2 years ago
Alternatives and similar repositories for rs-gfa
Users that are interested in rs-gfa are comparing it to the libraries listed below
Sorting:
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Rust implementation of VG handle graph☆19Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago
- ntHash implementation in Rust☆36Updated last year
- GBWT in Rust☆43Updated 7 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- Generate random test data for bioinformatics☆26Updated last year
- Fast and exact gap-affine partial order alignment☆56Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Compacted and colored de Bruijn graph construction and querying☆84Updated 2 weeks ago
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- A long read simulator based on badread idea☆22Updated 3 years ago
- ☆15Updated 4 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- ☆62Updated 2 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago