GFA parser in Rust
☆30May 26, 2023Updated 2 years ago
Alternatives and similar repositories for rs-gfa
Users that are interested in rs-gfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 2 weeks ago
- ☆31Mar 27, 2024Updated 2 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 3 weeks ago
- ☆19May 10, 2023Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 9 months ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆49Updated this week
- Succinct Data Structures for Rust☆58Jun 8, 2025Updated 11 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Apr 20, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Simple and transparent support for compressed files.☆81Apr 29, 2026Updated 3 weeks ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆286Dec 29, 2025Updated 4 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- generating hardware accelerators for pangenomic graph queries☆43Updated this week
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 3 months ago
- Optimized sequence graph implementations for graph genomics☆36Updated this week
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 3 weeks ago