GFA parser in Rust
☆30May 26, 2023Updated 3 years ago
Alternatives and similar repositories for rs-gfa
Users that are interested in rs-gfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated 2 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- ☆15Jun 29, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- ☆32Mar 27, 2024Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- ☆18Jan 29, 2025Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- ☆21Feb 15, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Succinct Data Structures for Rust☆58Jun 8, 2025Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆27Mar 31, 2022Updated 4 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Wavefront alignment algorithm (WFA) in Golang☆33Updated this week
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 9 months ago
- ☆28Updated this week
- ☆12Oct 25, 2026Updated last week
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated 2 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- generating hardware accelerators for pangenomic graph queries☆45Jul 1, 2026Updated 4 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 6 months ago
- ☆19May 10, 2023Updated 3 years ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆55Jul 29, 2026Updated 3 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago