chfi / rs-gfaLinks
GFA parser in Rust
☆31Updated 2 years ago
Alternatives and similar repositories for rs-gfa
Users that are interested in rs-gfa are comparing it to the libraries listed below
Sorting:
- Rust implementation of VG handle graph☆20Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- ntHash implementation in Rust☆36Updated 11 months ago
- Benchmarking pairwise aligners☆36Updated 4 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- Compacted and colored de Bruijn graph construction and querying☆83Updated this week
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- GBWT in Rust☆43Updated 2 months ago
- ☆28Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆30Updated 11 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- Library for the Handle Graph abstraction☆23Updated 2 weeks ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- ☆62Updated last week
- A Rust library for building modular, fast and compact indexes over genomic data☆13Updated last year
- ☆17Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Generate random test data for bioinformatics☆26Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- Efficient, parallel compression for terabyte-scale data☆47Updated last month
- ☆28Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year