mbhall88 / skc
Shared k-mer content between two genomes
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for skc
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆24Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated 11 months ago
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 5 months ago
- Minimum plain text representation of kmer sets☆17Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆11Updated 2 months ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 7 months ago
- k-mers and the like☆15Updated this week
- Next Index to Query Kmer Intersection☆16Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆19Updated 2 months ago
- Generate interactive dotplot from mummer4 output using plotly☆25Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- ☆11Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated this week
- Variant call adjudication☆16Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- convert CHAIN format to PAF format☆13Updated 6 months ago
- JTK -- a regional diploid genome assembler☆23Updated last month
- Variant call verification☆15Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- ☆32Updated last year