phasebook / phasebookLinks
Haplotype aware de novo assembly of diploid genome from long reads
☆54Updated 3 years ago
Alternatives and similar repositories for phasebook
Users that are interested in phasebook are comparing it to the libraries listed below
Sorting:
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆44Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆31Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆32Updated last year
- ☆38Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- ☆39Updated 2 years ago
- Draw a dot plot from a paf alignment☆38Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆55Updated 6 months ago
- Variant annotation and merging pipeline☆42Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆45Updated this week
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- ☆33Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago