Zhuxitong / ppsPCPLinks
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
☆27Updated 4 years ago
Alternatives and similar repositories for ppsPCP
Users that are interested in ppsPCP are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆31Updated 5 years ago
- ☆37Updated last year
- ☆27Updated 4 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆30Updated 7 months ago
- ☆42Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆16Updated 10 months ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 7 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆16Updated 3 years ago
- ☆41Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 2 months ago
- ☆36Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- Draw a dot plot from a paf alignment☆34Updated last week
- A genome assembly assessment pipeline.☆37Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- SV calling for diploid assemblies☆28Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago