Alternatives and similar repositories for ppsPCP:

Users that are interested in ppsPCP are comparing it to the libraries listed below

• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated 10 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆24Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆28Updated 2 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 7 months ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• jkimlab / DESCHRAMBLER
  ☆22Updated last year
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• JM-SONG / GenomeSyn
  ☆24Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 5 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆26Updated 3 months ago
• i10labtitech / GINGER
  ☆27Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• tbenavi1 / KMC
  Fast and frugal disk based k-mer counter
  ☆14Updated 4 years ago
• lardo / khaper
  ☆27Updated 2 years ago