Zhuxitong / ppsPCPLinks
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
☆27Updated 4 years ago
Alternatives and similar repositories for ppsPCP
Users that are interested in ppsPCP are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆31Updated 5 years ago
- ☆43Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 4 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- ☆31Updated 9 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆38Updated 3 weeks ago
- B73Ab10 genome assembly methods☆17Updated 3 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Draw a dot plot from a paf alignment☆34Updated last month
- ☆16Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- A Hi-C scaffolding method☆22Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- The MafFilter genome alignment processor☆19Updated 5 months ago
- ☆29Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆37Updated 2 years ago
- SV calling for diploid assemblies☆29Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago