A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
☆28May 24, 2021Updated 4 years ago
Alternatives and similar repositories for ppsPCP
Users that are interested in ppsPCP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- ☆14May 22, 2025Updated 10 months ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆38Jun 3, 2025Updated 9 months ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- ☆15Aug 6, 2025Updated 7 months ago
- ☆31Nov 25, 2019Updated 6 years ago
- ☆44May 8, 2024Updated last year
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- ☆31Apr 7, 2025Updated 11 months ago
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago
- ☆42May 19, 2025Updated 10 months ago
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- ☆27Jan 13, 2026Updated 2 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆24Apr 22, 2025Updated 11 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago