Alternatives and similar repositories for dentist

Users that are interested in dentist are comparing it to the libraries listed below

• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆23Updated 2 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last month
• ablab / VerityMap
  ☆39Updated 2 years ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆45Updated 6 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated last year
• mrvollger / NucFreq
  ☆38Updated 3 months ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• dfguan / asset
  assembly evaluation tool
  ☆35Updated 3 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 2 months ago
• maickrau / ribotin
  ☆38Updated last week
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆42Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• at-cg / RAFT
  ☆30Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 7 months ago
• shelkmike / Mabs
  Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
  ☆33Updated 2 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• i10labtitech / GINGER
  ☆29Updated 2 weeks ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆29Updated last month
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆44Updated last year
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆56Updated 4 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 3 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 6 months ago