a-ludi / dentistLinks
Close assembly gaps using long-reads at high accuracy.
☆49Updated last year
Alternatives and similar repositories for dentist
Users that are interested in dentist are comparing it to the libraries listed below
Sorting:
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- ☆38Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Differential k-mer analysis☆37Updated last year
- ☆28Updated last year
- assembly evaluation tool☆35Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆54Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- ☆38Updated last month
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- the pangenome graph evaluator☆29Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- FastK based version of Merqury☆28Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆28Updated last year