Alternatives and similar repositories for dentist

Users that are interested in dentist are comparing it to the libraries listed below

• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 7 months ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆51Updated 2 weeks ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆34Updated 3 weeks ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆22Updated 3 years ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated last month
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆22Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated last month
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆28Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆37Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• shelkmike / Mabs
  Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
  ☆31Updated last week
• dvdylus / read2tree
  ☆20Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last month
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆54Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆30Updated 3 weeks ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆68Updated 3 months ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated last year
• ablab / VerityMap
  ☆35Updated 2 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆78Updated last month
• at-cg / RAFT
  ☆23Updated 9 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆17Updated last year
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆28Updated 6 months ago