a-ludi / dentist
Close assembly gaps using long-reads at high accuracy.
☆48Updated last year
Alternatives and similar repositories for dentist:
Users that are interested in dentist are comparing it to the libraries listed below
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- PECAT, a phased error correct and assembly tool☆49Updated last week
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 2 weeks ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 3 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆21Updated 2 weeks ago
- ☆28Updated 2 weeks ago
- Correct and scaffold assemblies using long reads☆51Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆20Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- convert PAF format to CHAIN format☆28Updated 4 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆27Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 2 months ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆33Updated 7 months ago
- ☆35Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- MUMmer3☆17Updated 3 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 11 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 4 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago