a-ludi / dentistLinks
Close assembly gaps using long-reads at high accuracy.
☆49Updated last year
Alternatives and similar repositories for dentist
Users that are interested in dentist are comparing it to the libraries listed below
Sorting:
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Statistics and analysis for variation graphs☆45Updated 8 months ago
- ☆37Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- ☆36Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- ☆36Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- 🪡Correct and scaffold assemblies using long reads☆55Updated last year
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆80Updated 2 weeks ago
- ☆63Updated 2 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆28Updated 5 months ago
- ☆26Updated last year
- SV calling for diploid assemblies☆28Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 4 months ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆31Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- the pangenome graph evaluator☆28Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago