daihang16 / nubeamdedupLinks
Removing PCR duplicates for sequencing reads.
☆14Updated 5 years ago
Alternatives and similar repositories for nubeamdedup
Users that are interested in nubeamdedup are comparing it to the libraries listed below
Sorting:
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 11 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Hidden Markov Model based Copy number caller☆20Updated last year
- ☆16Updated 9 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- ☆13Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- ☆13Updated 2 years ago
- ☆20Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 11 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated this week
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆12Updated 4 years ago
- ☆14Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- ☆11Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago