daihang16 / nubeamdedup

Related projects ⓘ

Alternatives and complementary repositories for nubeamdedup

• yuansliu / minirmd
  ☆12Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated this week
• KiddLab / QuicK-mer2
  ☆11Updated last year
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 3 years ago
• mcfrith / dnarrange
  ☆15Updated 6 months ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 6 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆27Updated last month
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 2 weeks ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆13Updated 5 years ago
• dellytools / maze
  maze: match visualizer
  ☆9Updated 3 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 5 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 5 months ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆10Updated last year
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 4 months ago
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆11Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 4 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆16Updated 3 weeks ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• collaborativebioinformatics / nibSV
  ☆9Updated 2 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆22Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 2 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 7 months ago
• nf-cmgg / structural
  A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…
  ☆19Updated last month
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆11Updated 3 weeks ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 2 years ago