daihang16 / nubeamdedup
Removing PCR duplicates for sequencing reads.
☆14Updated 4 years ago
Alternatives and similar repositories for nubeamdedup:
Users that are interested in nubeamdedup are comparing it to the libraries listed below
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 5 months ago
- ☆16Updated 3 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆11Updated 2 years ago
- ☆13Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Fast sequencing data quality metrics☆26Updated last month
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Convert HAL to VG☆22Updated 9 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 11 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- ☆12Updated 3 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago