Genome alignment and synteny plots
☆36Mar 24, 2026Updated 6 months ago
Alternatives and similar repositories for asynt
Users that are interested in asynt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated 2 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Synteny Imager☆67Dec 18, 2025Updated 9 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆52Sep 24, 2026Updated 2 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- A Tidyverse-based workflow for local synteny visualization☆19Sep 3, 2025Updated last year
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- ☆43Jun 8, 2023Updated 3 years ago
- oxford dot plots☆176Sep 20, 2026Updated 3 weeks ago
- ☆16Apr 3, 2023Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 4 months ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆27Jun 27, 2026Updated 3 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆211Nov 23, 2025Updated 10 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Jul 30, 2026Updated 2 months ago
- ☆21Jun 20, 2022Updated 4 years ago
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 5 months ago
- OpenGL Powered Pretext Contact Map Viewer☆63Updated this week
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 9 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Best practices and workflow for genome annotation☆80Apr 14, 2025Updated last year
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- Neural network classification of TE☆104Apr 3, 2026Updated 6 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- ☆18Jun 30, 2023Updated 3 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago