simonhmartin / asyntLinks
Genome alignment and synteny plots
☆30Updated 2 years ago
Alternatives and similar repositories for asynt
Users that are interested in asynt are comparing it to the libraries listed below
Sorting:
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- ☆25Updated 10 months ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆17Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- ☆27Updated 3 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- ☆12Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- ☆28Updated last year