Correcting errors in noisy long reads using variation graphs
☆53Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for vechat
Users that are interested in vechat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆46Updated this week
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- ☆50Jul 2, 2026Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆227May 9, 2026Updated 3 months ago
- Multi-genome synteny block visualization tool☆63Updated this week
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 9 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last week
- A versatile compressor of third generation sequencing reads.☆53Mar 24, 2024Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Pipeline to convert a haploid assembly into diploid☆112Jan 23, 2025Updated last year
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆259Jul 10, 2026Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆88Jul 20, 2026Updated 2 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- General purpose utility related to GAF files☆32Updated this week
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Updated this week
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆51Updated this week
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆24May 4, 2023Updated 3 years ago
- Plotting tools for nanopore methylation data☆95Updated this week
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆125Updated this week
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- De novo genome assembly for long reads using an overlap graph☆23Jul 3, 2026Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- ☆130Jul 22, 2026Updated 2 weeks ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆153Jul 24, 2026Updated 2 weeks ago