HaploKit / vechat
Correcting errors in noisy long reads using variation graphs
☆51Updated 2 years ago
Alternatives and similar repositories for vechat:
Users that are interested in vechat are comparing it to the libraries listed below
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- ☆34Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 5 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆22Updated 7 months ago
- ☆25Updated last year
- Quality control plotting for long reads☆10Updated 10 months ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Differential k-mer analysis☆34Updated last year
- Genome size estimation from long read overlaps☆51Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆14Updated 11 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆33Updated 6 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month