Correcting errors in noisy long reads using variation graphs
☆53Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for vechat
Users that are interested in vechat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Oct 15, 2026Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 9 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆49Sep 18, 2026Updated last month
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 2 weeks ago
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- ☆25Sep 22, 2026Updated last month
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- ☆85Mar 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆46Updated this week
- A versatile compressor of third generation sequencing reads.☆53Mar 24, 2024Updated 2 years ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- ☆50Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆267Sep 16, 2026Updated last month
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Multi-genome synteny block visualization tool☆67Oct 13, 2026Updated 2 weeks ago
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆236May 9, 2026Updated 5 months ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- Linear-time de novo Long Read Assembler☆43Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- ☆46Apr 18, 2026Updated 6 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago