HaploKit / vechatLinks
Correcting errors in noisy long reads using variation graphs
☆51Updated 2 years ago
Alternatives and similar repositories for vechat
Users that are interested in vechat are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Linear-time de novo Long Read Assembler☆42Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆42Updated 2 weeks ago
- ☆27Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆33Updated 3 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- ☆37Updated last year
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- ☆17Updated last year