HaploKit / vechat
Correcting errors in noisy long reads using variation graphs
☆51Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for vechat
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Quality control plotting for long reads☆10Updated 6 months ago
- A tool for de novo clustering of long transcriptomic reads☆14Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- ☆40Updated this week
- ☆31Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated last year
- ☆30Updated 2 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆28Updated 2 months ago
- Genomewide Epistasis Analysis on Bacteria☆13Updated 2 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated this week
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- ☆39Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week