🪡Correct and scaffold assemblies using long reads
☆57Apr 1, 2026Updated 2 months ago
Alternatives and similar repositories for LongStitch
Users that are interested in LongStitch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimizer-based assembly scaffolding and mapping using long reads☆52Apr 1, 2026Updated 2 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- ⛓ Correct misassemblies using linked AND long reads☆63Mar 24, 2026Updated 2 months ago
- ☆121Updated this week
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆86Apr 1, 2026Updated 2 months ago
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 2 months ago
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆565Feb 14, 2024Updated 2 years ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆49Mar 19, 2023Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 27, 2026Updated 2 months ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Dec 16, 2024Updated last year
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Updated this week
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆50Aug 28, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆167Sep 8, 2024Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- Differential k-mer analysis☆41Jan 29, 2024Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago