🪡Correct and scaffold assemblies using long reads
☆62Apr 1, 2026Updated 6 months ago
Alternatives and similar repositories for LongStitch
Users that are interested in LongStitch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimizer-based assembly scaffolding and mapping using long reads☆56Apr 1, 2026Updated 6 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- ⛓ Correct misassemblies using linked AND long reads☆65Mar 24, 2026Updated 7 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆251Sep 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- ☆124Sep 29, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Linear-time de novo Long Read Assembler☆43Updated this week
- ☆85Mar 3, 2025Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated 6 months ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identify and find telomeres, or telomeric repeats in a genome.☆180Oct 23, 2026Updated last week
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 4 months ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Multi-genome synteny block visualization tool☆67Oct 13, 2026Updated 2 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆818May 31, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 11 months ago
- ✏️ Genome assembly polishing & SNV detection☆74Sep 10, 2026Updated last month
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago