Chenglin20170390 / Haplotype-diversity
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
☆12Updated 5 months ago
Alternatives and similar repositories for Haplotype-diversity:
Users that are interested in Haplotype-diversity are comparing it to the libraries listed below
- Construct and Analyze the North American Vitis pangenome☆21Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 10 months ago
- SINE annotation tool for plant genomes☆17Updated 11 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆15Updated last week
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Updated last year
- ☆15Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆15Updated this week
- ☆15Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- ☆24Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated last month
- A Hi-C scaffolding method☆22Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 3 months ago
- ☆19Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 8 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated 10 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- ☆14Updated this week
- Genome alignment and synteny plots☆27Updated last year
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 9 months ago
- Genome Assembly 102☆13Updated this week
- Draw a dot plot from a paf alignment☆24Updated 3 weeks ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆15Updated 3 weeks ago
- ☆13Updated last year