maiziezhoulab / LRSV_combo
Long Read Based SV Calling Tools Analysis
☆11Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for LRSV_combo
- Set of script for the paper on the cattle graph genome☆13Updated last year
- ☆22Updated last year
- Construct and Analyze the North American Vitis pangenome☆21Updated 10 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated last year
- plot genome alignment synteny☆19Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆16Updated 5 years ago
- ☆15Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- ☆16Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- ☆22Updated 3 weeks ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆20Updated last year
- ☆14Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- ☆14Updated 11 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆11Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- Phylogenetic iDentification of Subgenomes☆10Updated 2 years ago
- ☆14Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago