JLSteenwyk / orthosnapLinks
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
☆27Updated 3 months ago
Alternatives and similar repositories for orthosnap
Users that are interested in orthosnap are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated 3 weeks ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- ☆30Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 4 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- TD2☆29Updated 3 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- The MafFilter genome alignment processor☆19Updated 2 weeks ago
- Robust identification of orthologous Synteny with the Orthology Index☆36Updated 2 months ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago