a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
☆29Feb 23, 2026Updated last month
Alternatives and similar repositories for orthosnap
Users that are interested in orthosnap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 5 months ago
- a broadly applicable tool for automated gene identification and retrieval☆41Updated this week
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ANI based satellite annotation☆26Mar 2, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆88Updated this week
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 7 months ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 weeks ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Domain based annotation of transposable elements☆22Oct 8, 2025Updated 5 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆28May 13, 2025Updated 10 months ago
- An Interactive Desktop Platform for Drawing Gene Structure and Protein Architecture☆23Aug 8, 2025Updated 7 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆25Dec 3, 2025Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 9 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 6 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- ☆17Nov 19, 2025Updated 4 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TD2☆35Jan 14, 2026Updated 2 months ago
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated last year
- Codon-Aware Multiple Sequence Alignments☆20Nov 15, 2024Updated last year
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- ☆26Mar 23, 2024Updated 2 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆82Mar 23, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- This is the standalone version of the EviAnn pipeline☆143Mar 13, 2026Updated 2 weeks ago
- ☆16Apr 3, 2023Updated 2 years ago