ShiuLab / PseudogenePipelineLinks
☆40Updated last year
Alternatives and similar repositories for PseudogenePipeline
Users that are interested in PseudogenePipeline are comparing it to the libraries listed below
Sorting:
- Genome Annotation Pipeline☆35Updated 9 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated last year
- HiCAT new project☆28Updated 2 weeks ago
- ☆29Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆19Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- ☆31Updated 9 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆29Updated 5 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆28Updated last year
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 4 months ago
- ☆20Updated 9 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆24Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆28Updated 3 months ago
- a Semi-automated pipeline for assembling T2T genome☆17Updated 3 weeks ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year